Basic Information
Locus ID:
Thhalv10019915m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3004088 | 3010407 | - | Thhalv10019915m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 141,053.27 Da | 52.23 | 77.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1131 | 1173 | 1.6322E-17 | - |
| CDD | cd12108 | Hr-like | 313 | 442 | 8.11946E-20 | - |
| CDD | cd12108 | Hr-like | 54 | 180 | 4.32462E-31 | - |
| CDD | cd12108 | Hr-like | 663 | 821 | 7.32155E-25 | - |
| Pfam | PF14599 | Zinc-ribbon | 1179 | 1236 | 2.8E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 1003 | 1078 | 2.8E-17 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1131 | 1173 | 1.6E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 310 | 444 | 1.7E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 56 | 182 | 2.3E-9 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1069 | 1125 | 1.44E-14 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 995 | 1059 | 1.83E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1130 | 1177 | 1.77E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1125 | 1175 | 7.4E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 654 | 887 | 2.9E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 50 | 200 | 6.1E-26 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1203 | 1246 | 6.6E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 311 | 460 | 2.0E-16 | - |
| SMART | SM00184 | ring_2 | 1132 | 1173 | 9.8E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 996 | 1065 | 25.47604 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1132 | 1173 | 11.250026 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1068 | 1131 | 29.222317 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_006406622.1 | zinc finger protein BRUTUS [Eutrema salsugineum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | V4LCC8 | Zinc finger protein BRUTUS OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019915mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology