Basic Information
Locus ID:
Thhalv10019894m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 5151568 | 5156873 | + | Thhalv10019894m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 166,635.48 Da | 39.10 | 106.13 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1238 | 1458 | 3.12304E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 1.51229E-90 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 623 | 823 | 2.64701E-92 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 921 | 1215 | 1.43373E-88 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 641 | 775 | 5.1E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 310 | 576 | 4.8E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1258 | 1405 | 2.1E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 923 | 1163 | 4.5E-27 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1232 | 1465 | 3.49E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 297 | 601 | 4.58E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 922 | 1221 | 4.32E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 845 | 4.36E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 605 | 875 | 5.3E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 885 | 1221 | 1.5E-56 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 285 | 604 | 9.6E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1223 | 1476 | 4.0E-80 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1266 | 1451 | 3.4E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 650 | 823 | 1.8E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 623 | 846 | 22.329041 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 923 | 1203 | 37.862579 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 589 | 25.499676 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1240 | 1474 | 17.247034 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 748 | 762 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 895 | - | - |
| Coils | Coil | Coil | 878 | 898 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13100.1 | multidrug resistance-associated protein 7. member of MRP subfamily | 0 |
| RefSeq | XP_006407262.1 | ABC transporter C family member 7 [Eutrema salsugineum] | 0 |
| Q9LK62 | ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 SV=1 | 0 | |
| TrEMBL | V4LE25 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019894mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology