Basic Information
Locus ID:
Thhalv10019893m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ATPase activity, coupled to transmembrane movement of substances
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 5158747 | 5164135 | + | Thhalv10019893m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 168,287.77 Da | 40.79 | 104.35 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 326 | 613 | 3.38521E-104 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 639 | 839 | 7.69143E-93 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 949 | 1243 | 3.62752E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1266 | 1486 | 1.65974E-122 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 952 | 1192 | 2.9E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1285 | 1433 | 1.0E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 657 | 791 | 2.1E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 327 | 592 | 9.3E-23 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 949 | 1249 | 1.09E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 637 | 861 | 1.04E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1259 | 1493 | 7.3E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 317 | 624 | 3.4E-33 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 625 | 2.9E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 626 | 875 | 4.8E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 913 | 1249 | 8.5E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1251 | 1504 | 2.0E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 666 | 839 | 1.7E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1294 | 1486 | 5.8E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 325 | 605 | 32.224926 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 639 | 862 | 22.062269 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 951 | 1231 | 38.579407 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1270 | 1502 | 18.180735 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 764 | 778 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 923 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_006407263.1 | ABC transporter C family member 3 [Eutrema salsugineum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | V4NQ64 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019893mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology