Basic Information
Locus ID:
Thhalv10019882m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4608061 | 4614877 | - | Thhalv10019882m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 200,276.94 Da | 51.31 | 76.43 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 383 | 655 | 2.12909E-138 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1492 | 1755 | 2.76698E-148 | IPR044769 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 404 | 644 | 9.7E-33 | IPR002423 |
| Pfam | PF01363 | FYVE zinc finger | 35 | 103 | 7.9E-17 | IPR000306 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1531 | 1697 | 4.2E-32 | IPR002498 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1491 | 1755 | 1.57E-75 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 33 | 105 | 3.74E-19 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 449 | 621 | 3.92E-41 | IPR027409 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 448 | 621 | 6.3E-53 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1450 | 1612 | 3.9E-35 | IPR027484 |
| Gene3D | G3DSA:3.30.810.10 | - | 1615 | 1756 | 5.0E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 108 | 1.4E-20 | IPR013083 |
| SMART | SM00064 | fyve_4 | 30 | 105 | 7.5E-19 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1465 | 1756 | 2.4E-118 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1438 | 1755 | 56.108021 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 38 | 104 | 13.008968 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1207 | 1238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 795 | - | - |
| Coils | Coil | Coil | 1075 | 1102 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_006407097.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Eutrema salsugineum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | V4LDN9 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019882mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology