Basic Information
Locus ID:
Thhalv10019846m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 1240243 | 1240912 | + | Thhalv10019846m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 22,938.19 Da | 49.32 | 88.17 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 146 | 188 | 2.18701E-6 | - |
| Pfam | PF13639 | Ring finger domain | 145 | 187 | 1.5E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 193 | 7.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 192 | 9.1E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 188 | 10.571388 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77830.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024016678.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF181 [Eutrema salsugineum] | 0 |
| TrEMBL | V4M854 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019846mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77830.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005670m.g.v1.0, Thhalv10019846m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g20460.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g074000.2N |