Basic Information
Locus ID:
Thhalv10019838m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 2672166 | 2673991 | + | Thhalv10019838m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 44,248.00 Da | 42.11 | 78.53 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 97 | 366 | 1.2305E-95 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 96 | 303 | 1.6E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 69 | 365 | 3.51E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 65 | 170 | 9.6E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 171 | 388 | 3.0E-56 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 91 | 367 | 35.848785 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 214 | 226 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 97 | 124 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74490.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006390418.1 | probable serine/threonine-protein kinase PBL3 [Eutrema salsugineum] | 0 |
| O49840 | Probable serine/threonine-protein kinase PBL3 OS=Arabidopsis thaliana OX=3702 GN=PBL3 PE=1 SV=1 | 0 | |
| TrEMBL | V4K9I6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019838mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019838m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g048050.2N |