Basic Information
Locus ID:
Thhalv10019837m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 8692523 | 8693308 | + | Thhalv10019837m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 28,591.75 Da | 39.41 | 75.79 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 198 | 237 | 2.4E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 104 | 150 | 1.0E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 42 | 91 | 5.4E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 181 | 238 | 4.88E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 73 | 159 | 1.94E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13590.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | NP_187968.1 | Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana] | 0 |
| TrEMBL | Q9LHP0 | Phorbol-ester/DAG-type domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At3g13590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10018463m.g.v1.0, Thhalv10019835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g017620.2N, BniB07g025220.2N |