Basic Information
Locus ID:
Thhalv10019835m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 8689508 | 8690321 | + | Thhalv10019835m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 19,018.96 Da | 45.74 | 73.35 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 76 | 120 | 2.4E-10 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 9 | 62 | 1.49E-5 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 44 | 133 | 6.73E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 155 | 3.7E-6 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13590.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_048613097.1 | uncharacterized protein LOC106440603 [Brassica napus] | 0 |
| TrEMBL | V4KC47 | C1_2 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019835mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10018463m.g.v1.0, Thhalv10019835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g017620.2N, BniB07g025220.2N |