Basic Information
Locus ID:
Thhalv10019791m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 4898080 | 4899153 | + | Thhalv10019791m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 41,663.68 Da | 54.18 | 85.13 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 178 | 343 | 2.0E-36 | IPR006527 |
| Pfam | PF00646 | F-box domain | 8 | 44 | 2.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 68 | 3.79E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 44 | 8.7E-7 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 2.2E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 319 | 6.3E-42 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 48 | 9.815402 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59610.1 | F-box family protein / jacalin lectin family protein. | 0 |
| RefSeq | XP_006390969.1 | jacalin-related lectin 38 [Eutrema salsugineum] | 0 |
| Q9M1A7 | Jacalin-related lectin 38 OS=Arabidopsis thaliana OX=3702 GN=JAL38 PE=2 SV=1 | 0 | |
| TrEMBL | V4JSJ0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019791mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |