Basic Information
Locus ID:
Thhalv10019750m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 4336524 | 4337786 | + | Thhalv10019750m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 47,576.84 Da | 46.12 | 90.91 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 284 | 394 | 1.1E-38 | IPR003690 |
| Pfam | PF02536 | mTERF | 88 | 298 | 1.2E-60 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 185 | 402 | 5.8E-39 | IPR038538 |
| SMART | SM00733 | mt_12 | 274 | 304 | 4.5E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 341 | 375 | 0.1 | IPR003690 |
| SMART | SM00733 | mt_12 | 102 | 133 | 1.2E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 239 | 269 | 4.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 309 | 340 | 0.009 | IPR003690 |
| SMART | SM00733 | mt_12 | 138 | 170 | 200.0 | IPR003690 |
| Coils | Coil | Coil | 420 | 420 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61970.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_006390854.1 | uncharacterized protein LOC18009244 [Eutrema salsugineum] | 0 |
| TrEMBL | V4JSA2 | Mitochondrial transcription termination factor family protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019750mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |