Basic Information
Locus ID:
Thhalv10019668m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 774464 | 777935 | + | Thhalv10019668m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 76,768.03 Da | 36.32 | 86.62 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 2.1E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 408 | 670 | 7.5E-40 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 156 | 198 | 1.5E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 234 | 1.16E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 385 | 672 | 1.12E-70 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 248 | 9.7E-48 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 482 | 696 | 4.6E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 363 | 481 | 2.6E-27 | - |
| SMART | SM00369 | LRR_typ_2 | 161 | 184 | 3.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 119 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 212 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 137 | 160 | 130.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 404 | 675 | 35.806381 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 116 | 129 | 5.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 161 | 174 | 5.0E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 261 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78980.1 | STRUBBELIG-receptor family 5. | 0 |
| RefSeq | XP_006389935.1 | protein STRUBBELIG-RECEPTOR FAMILY 5 [Eutrema salsugineum] | 0 |
| Q6R2K1 | Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana OX=3702 GN=SRF5 PE=1 SV=1 | 0 | |
| TrEMBL | V4M7W6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019668mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology