Basic Information
Locus ID:
Thhalv10019649m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 10138072 | 10139203 | + | Thhalv10019649m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 40,845.41 Da | 42.71 | 92.71 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 203 | 299 | 5.6E-25 | IPR013187 |
| Pfam | PF00646 | F-box domain | 27 | 65 | 8.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 75 | 2.75E-12 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 73 | 336 | 2.35E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 65 | 3.8E-7 | - |
| SMART | SM00256 | fbox_2 | 29 | 69 | 3.8E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 202 | 302 | 1.3E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 68 | 11.749494 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024010477.1 | putative F-box protein At3g52320 [Eutrema salsugineum] | 0 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 0 | |
| TrEMBL | V4JTW8 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019649mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |