Basic Information
Locus ID:
Thhalv10019614m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
DNA (cytosine-5-)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 5129889 | 5132929 | - | Thhalv10019614m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 54,925.70 Da | 53.80 | 81.50 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 360 | 476 | 8.3E-11 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 360 | 479 | 2.54E-19 | IPR029063 |
| SUPERFAMILY | SSF46934 | UBA-like | 69 | 129 | 6.38E-5 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 10 | 50 | 3.9E-5 | IPR009060 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 205 | 357 | 5.98E-15 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 253 | 340 | 3.8E-7 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 70 | 129 | 2.4E-8 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1 | 53 | 9.2E-8 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 359 | 486 | 6.0E-27 | - |
| SMART | SM00165 | uba_6 | 9 | 47 | 3.0 | IPR015940 |
| SMART | SM00165 | uba_6 | 87 | 126 | 0.36 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 7 | 48 | 9.293785 | IPR015940 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 360 | 487 | 22.111738 | IPR001525 |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 193 | 485 | 105.189659 | IPR030380 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 84 | 127 | 10.064893 | IPR015940 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15380.1 | domains rearranged methylase 1. Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. | 0 |
| RefSeq | XP_024006212.1 | LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase DRM1 [Eutrema salsugineum] | 0 |
| Q9LXE5 | DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=3 SV=2 | 0 | |
| TrEMBL | V4KLY0 | SAM-dependent MTase DRM-type domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019614mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology