Basic Information
Locus ID:
Thhalv10019612m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mRNA 3'-splice site recognition
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 1797104 | 1799697 | + | Thhalv10019612m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 55,776.66 Da | 50.39 | 82.02 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01805 | Surp module | 220 | 260 | 2.8E-10 | IPR000061 |
| Pfam | PF01805 | Surp module | 57 | 77 | 1.4E-4 | IPR000061 |
| Pfam | PF01805 | Surp module | 283 | 314 | 2.2E-7 | IPR000061 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 439 | 484 | 9.54E-6 | IPR029071 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 202 | 261 | 8.63E-11 | IPR035967 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 34 | 75 | 2.22E-6 | IPR035967 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 275 | 322 | 6.67E-7 | IPR035967 |
| Gene3D | G3DSA:3.10.20.90 | - | 424 | 485 | 1.3E-5 | - |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 279 | 323 | 1.9E-7 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 215 | 278 | 3.5E-15 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 52 | 83 | 1.7E-6 | IPR035967 |
| SMART | SM00648 | surpneu2 | 220 | 268 | 0.036 | IPR000061 |
| SMART | SM00648 | surpneu2 | 57 | 89 | 4.9 | IPR000061 |
| SMART | SM00648 | surpneu2 | 281 | 323 | 0.001 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 283 | 325 | 9.456436 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 222 | 265 | 11.347693 | IPR000061 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06520.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. | 0 |
| RefSeq | XP_024009667.1 | probable splicing factor 3A subunit 1 [Eutrema salsugineum] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | V4KJK6 | SURP motif domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019612mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 4 | BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... |