Basic Information
Locus ID:
Thhalv10019608m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 4342746 | 4346857 | - | Thhalv10019608m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 69,076.63 Da | 50.75 | 65.34 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 239 | 263 | 7.9E-6 | IPR001876 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 483 | 576 | 4.0E-15 | IPR000608 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 319 | 341 | 5.7E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 284 | 308 | 7.9E-6 | IPR001876 |
| SUPERFAMILY | SSF54495 | UBC-like | 452 | 581 | 8.61E-36 | IPR016135 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 278 | 309 | 3.14E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 275 | 312 | 1.8E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 230 | 267 | 2.1E-8 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 440 | 586 | 5.3E-41 | IPR016135 |
| Gene3D | G3DSA:4.10.1060.10 | - | 313 | 347 | 1.5E-9 | - |
| SMART | SM00212 | ubc_7 | 456 | 600 | 6.8E-18 | - |
| SMART | SM00547 | zf_4 | 241 | 265 | 9.0E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 319 | 343 | 2.3E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 286 | 310 | 2.5E-6 | IPR001876 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 453 | 601 | 36.548458 | IPR000608 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 239 | 268 | 9.291992 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 317 | 346 | 9.291992 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 284 | 313 | 9.291992 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 243 | 262 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 288 | 307 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 321 | 340 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 439 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.2 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | NP_001185364.1 | Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana] | 0 |
| Q9CAB6 | Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1 | 0 | |
| TrEMBL | V4KE99 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019608mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology