Basic Information
Locus ID:
Thhalv10019556m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 8823862 | 8826275 | - | Thhalv10019556m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 28,837.02 Da | 41.76 | 86.16 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 90 | 152 | 1.85403E-22 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 89 | 152 | 9.7E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 14 | 77 | 2.1E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 13 | 163 | 1.62E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 81 | 178 | 1.0E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 3 | 80 | 5.5E-22 | - |
| SMART | SM00054 | efh_1 | 15 | 43 | 6.6E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 126 | 154 | 3.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 90 | 118 | 7.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 51 | 79 | 5.0E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 11 | 46 | 16.466084 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 121 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 47 | 82 | 13.341799 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 122 | 157 | 14.792358 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 60 | 72 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 24 | 36 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 135 | 147 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 99 | 111 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37770.1 | EF hand calcium-binding protein family. Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Also regulates nitric oxide levels. | 0 |
| RefSeq | XP_024009245.1 | calcium-binding protein CML24 [Eutrema salsugineum] | 0 |
| P25070 | Calcium-binding protein CML24 OS=Arabidopsis thaliana OX=3702 GN=CML24 PE=2 SV=2 | 0 | |
| TrEMBL | V4MBV7 | EF-hand domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019556mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology