Basic Information
Locus ID:
Thhalv10019476m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 4050429 | 4051597 | - | Thhalv10019476m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 36,101.76 Da | 43.42 | 83.60 | -0.43 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71290.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_024006017.1 | LOW QUALITY PROTEIN: putative F-box protein At1g70960 [Eutrema salsugineum] | 0 |
| Q3ECE2 | Putative F-box protein At1g70960 OS=Arabidopsis thaliana OX=3702 GN=At1g70960 PE=4 SV=1 | 0 | |
| TrEMBL | V4KE49 | FBA_3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019476mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G70380.1, AT1G70390.1, AT1G70960.1, AT1G70970.1 ... |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019476m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03160.v2.2, Sp6g11610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g059530.2N |