Basic Information
Locus ID:
Thhalv10019473m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3986471 | 3987619 | - | Thhalv10019473m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 36,085.92 Da | 56.53 | 78.22 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 26 | 70 | 2.1E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 78 | 1.23E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 122 | 233 | 6.28E-16 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 69 | 2.2E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 87 | 252 | 7.0E-11 | IPR015915 |
| SMART | SM00256 | fbox_2 | 30 | 70 | 9.8E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 72 | 9.576953 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44700.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_024006006.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At2g44700 [Eutrema salsugineum] | 0 |
| Q84RE1 | F-box/kelch-repeat protein At2g44700 OS=Arabidopsis thaliana OX=3702 GN=At2g44700 PE=2 SV=2 | 0 | |
| TrEMBL | V4KLA8 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019473mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44630.1, AT2G44700.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000664m.g.v1.0, Thhalv10018745m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g03450.v2.2, Sp4g05040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g017790.2N, BniB08g043110.2N |