Basic Information
Locus ID:
Thhalv10019453m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 8801642 | 8802810 | + | Thhalv10019453m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 42,191.34 Da | 47.77 | 85.16 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 61 | 3.5E-5 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 218 | 313 | 3.2E-16 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 80 | 7.33E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 25 | 65 | 0.0011 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 122 | 324 | 9.8E-31 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 8.623154 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11590.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_024010155.1 | LOW QUALITY PROTEIN: F-box protein At4g11590 [Eutrema salsugineum] | 0 |
| Q9T0C7 | F-box protein At4g11590 OS=Arabidopsis thaliana OX=3702 GN=At4g11590 PE=1 SV=1 | 0 | |
| TrEMBL | V4JTN4 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019453mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47800.1, AT1G47810.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015726m.g.v1.0, Thhalv10019453m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB03g042830.2N, BniB05g023080.2N, BniB05g023090.2N ... |