Basic Information
Locus ID:
Thhalv10019435m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3882349 | 3885155 | - | Thhalv10019435m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 66,506.36 Da | 39.71 | 96.82 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 286 | 557 | 5.18691E-164 | - |
| Pfam | PF00069 | Protein kinase domain | 281 | 552 | 5.2E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 8 | 44 | 6.0E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 145 | 160 | 1.9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 72 | 131 | 2.3E-6 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 259 | 555 | 1.28E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 11 | 171 | 5.53E-41 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 357 | 574 | 4.8E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 7 | 190 | 2.6E-62 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 249 | 356 | 6.2E-39 | - |
| SMART | SM00220 | serkin_6 | 280 | 554 | 8.6E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 280 | 567 | 36.074928 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 403 | 415 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 286 | 308 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_006390738.2 | somatic embryogenesis receptor kinase 1 [Eutrema salsugineum] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | V4KAE7 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019435mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology