Basic Information
Locus ID:
Thhalv10019430m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MAP kinase kinase kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 10560174 | 10560926 | - | Thhalv10019430m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 26,120.80 Da | 51.45 | 80.98 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 3 | 150 | 1.2E-24 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 157 | 2.7E-38 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 209 | 2.9E-36 | - |
| SMART | SM00220 | serkin_6 | 1 | 150 | 9.3E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 150 | 24.753593 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42550.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_024010536.1 | mitogen-activated protein kinase kinase kinase 18 [Eutrema salsugineum] | 0 |
| Q39008 | Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MEKK1 PE=1 SV=2 | 0 | |
| TrEMBL | V4JTY5 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019430mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 9 | AT2G05060.1, AT2G34290.1, AT2G41910.1, AT2G41920.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10000714m.g.v1.0, Thhalv10012027m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp1g33950.v2.2, Sp2g03310.v2.2, Sp4g12780.v2.2 ... |
| Brassicaceae | Brassica nigra | 17 | BniB01g003760.2N, BniB06g001160.2N, BniB06g001430.2N ... |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0332, Cgl09G0845 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3444 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.86 |