Basic Information
Locus ID:
Thhalv10019281m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 4869650 | 4871310 | + | Thhalv10019281m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 17,284.28 Da | 74.12 | 75.13 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 145 | 9.14926E-74 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 144 | 2.1E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 150 | 1.11E-62 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 152 | 5.3E-67 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 150 | 4.5E-68 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 150 | 60.206535 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 77 | 92 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_006390966.1 | ubiquitin-conjugating enzyme E2 2 [Eutrema salsugineum] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | V4KEK0 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019281mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology