Basic Information
Locus ID:
Thhalv10019263m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 5186040 | 5187378 | - | Thhalv10019263m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 17,220.24 Da | 34.41 | 77.09 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 85 | 154 | 3.571E-33 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 84 | 153 | 8.2E-30 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 14 | 92 | 6.02E-29 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 85 | 155 | 6.28E-25 | IPR012340 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 84 | 2.3E-44 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 85 | 157 | 1.1E-33 | - |
| SMART | SM01376 | eIF_5a_2 | 84 | 153 | 5.6E-34 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 16 | 151 | 1.4E-42 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 156 | 6.7E-68 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 49 | 56 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_006391021.1 | eukaryotic translation initiation factor 5A-3 [Eutrema salsugineum] | 0 |
| Q9C505 | Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-3 PE=2 SV=1 | 0 | |
| TrEMBL | V4KEQ8 | Eukaryotic translation initiation factor 5A OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019263mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology