Basic Information
Locus ID:
Thhalv10019060m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 1614463 | 1616453 | + | Thhalv10019060m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 26,787.61 Da | 61.54 | 51.78 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 144 | 226 | 1.01254E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 146 | 215 | 4.2E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 128 | 238 | 3.9E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 231 | 8.6E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 145 | 221 | 1.3E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 144 | 230 | 12.406837 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_006390140.1 | nuclear speckle RNA-binding protein A isoform X2 [Eutrema salsugineum] | 0 |
| A1A6K6 | Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1 | 0 | |
| TrEMBL | V4M8E0 | RRM domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019060mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology