Basic Information
Locus ID:
Thhalv10019012m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 5220780 | 5222206 | + | Thhalv10019012m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 29,861.05 Da | 43.68 | 98.90 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 44 | 83 | 2.3E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 100 | 3.29E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 136 | 2.8E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 99 | 10.055033 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 63 | 72 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006391030.1 | uncharacterized protein LOC18008209 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MAU1 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019012mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology