Basic Information
Locus ID:
Thhalv10018922m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 6790195 | 6791521 | - | Thhalv10018922m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 32,910.04 Da | 43.14 | 79.77 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 235 | 274 | 8.9E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 243 | 277 | 5.76E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 22 | 150 | 6.54E-14 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 223 | 280 | 6.1E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4 | 172 | 4.0E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 232 | 274 | 10.816236 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 306 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_006391290.2 | F-box protein At1g67340 [Eutrema salsugineum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | V4MBL5 | MYND-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018922mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology