Basic Information
Locus ID:
Thhalv10018859m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3565030 | 3566195 | - | Thhalv10018859m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 36,120.90 Da | 75.18 | 81.31 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 127 | 170 | 1.08133E-19 | - |
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 6.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 174 | 3.77E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 174 | 4.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 4.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 290 | - | - |
| Coils | Coil | Coil | 53 | 73 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_006390676.1 | RING-H2 finger protein ATL3 [Eutrema salsugineum] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | V4KDU0 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018859mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology