Basic Information
Locus ID:
Thhalv10018826m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
High Mobility Group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 1992210 | 1994643 | + | Thhalv10018826m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 38,742.51 Da | 52.27 | 70.62 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 255 | 318 | 6.51195E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 40 | 125 | 4.81296E-48 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 255 | 322 | 3.0E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 43 | 125 | 2.4E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 252 | 324 | 6.81E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 135 | 8.24E-32 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 21 | 135 | 2.7E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 240 | 334 | 3.8E-19 | IPR036910 |
| SMART | SM00501 | bright_3 | 39 | 130 | 6.4E-37 | IPR001606 |
| SMART | SM00398 | hmgende2 | 254 | 323 | 6.4E-13 | IPR009071 |
| SMART | SM01014 | ARID_2 | 35 | 125 | 1.9E-33 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 38 | 129 | 25.754257 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 255 | 322 | 14.063882 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 255 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006390237.1 | high mobility group B protein 9 [Eutrema salsugineum] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | V4KJV3 | High mobility group B protein 9 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018826mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology