Basic Information
Locus ID:
Thhalv10018745m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3990409 | 3991585 | - | Thhalv10018745m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 42,338.12 Da | 55.07 | 85.25 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 71 | 3.8E-9 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 182 | 216 | 3.8E-6 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 123 | 335 | 4.71E-25 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 103 | 2.88E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 108 | 2.7E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 135 | 279 | 3.1E-8 | IPR015915 |
| SMART | SM00256 | fbox_2 | 31 | 71 | 2.4E-9 | IPR001810 |
| SMART | SM00612 | kelc_smart | 187 | 233 | 0.0014 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 73 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44700.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_024006006.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At2g44700 [Eutrema salsugineum] | 0 |
| Q84RE1 | F-box/kelch-repeat protein At2g44700 OS=Arabidopsis thaliana OX=3702 GN=At2g44700 PE=2 SV=2 | 0 | |
| TrEMBL | V4KAH1 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018745mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44630.1, AT2G44700.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000664m.g.v1.0, Thhalv10018745m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g03450.v2.2, Sp4g05040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g017790.2N, BniB08g043110.2N |