Basic Information
Locus ID:
Thhalv10018655m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 500082 | 503927 | + | Thhalv10018655m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 43,613.24 Da | 55.37 | 77.30 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 37 | 110 | 1.78437E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 39 | 112 | 2.4E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 183 | 216 | 1.3E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 276 | 331 | 3.1E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 359 | 394 | 7.3E-12 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 272 | 340 | 7.85E-24 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 37 | 121 | 4.84E-19 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 183 | 226 | 5.11E-9 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 338 | 400 | 3.65E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 265 | 331 | 3.9E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 350 | 398 | 3.6E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 174 | 221 | 7.0E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 34 | 113 | 1.0E-25 | - |
| SMART | SM00213 | ubq_7 | 37 | 111 | 7.1E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 359 | 396 | 2.2E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 178 | 218 | 0.24 | IPR015940 |
| SMART | SM00727 | CBM | 274 | 317 | 9.9E-8 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 37 | 402 | 1.3E-117 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 183 | 219 | 10.884193 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 357 | 397 | 15.390351 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 37 | 115 | 18.12723 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 384 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 302 | 324 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 369 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 385 | 400 | 1.5E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 153 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_024008897.1 | ubiquitin receptor RAD23b isoform X1 [Eutrema salsugineum] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | V4K827 | Ubiquitin receptor RAD23 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018655mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology