Basic Information
Locus ID:
Thhalv10018639m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
La protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 42456 | 44572 | + | Thhalv10018639m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 45,417.01 Da | 45.93 | 79.88 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08030 | LA_like_plant | 8 | 97 | 3.70573E-41 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 175 | 5.9E-7 | IPR000504 |
| Pfam | PF08777 | RNA binding motif | 309 | 388 | 2.0E-8 | IPR014886 |
| Pfam | PF05383 | La domain | 13 | 58 | 6.8E-20 | IPR006630 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 305 | 384 | 1.9E-7 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 106 | 174 | 6.11E-10 | IPR035979 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 5 | 100 | 2.18E-18 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 4 | 104 | 1.0E-22 | IPR036388 |
| Gene3D | G3DSA:3.30.70.330 | - | 279 | 400 | 2.5E-10 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 105 | 197 | 3.8E-11 | IPR012677 |
| SMART | SM00715 | la | 6 | 98 | 4.0E-39 | IPR006630 |
| ProSiteProfiles | PS51939 | xRRM domain profile. | 291 | 410 | 14.107538 | IPR014886 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 114 | 197 | 9.507419 | IPR000504 |
| ProSiteProfiles | PS50961 | La-type HTH domain profile. | 2 | 105 | 23.367702 | IPR006630 |
| PRINTS | PR00302 | Lupus La protein signature | 155 | 173 | 1.6E-10 | IPR002344 |
| PRINTS | PR00302 | Lupus La protein signature | 15 | 32 | 1.6E-10 | IPR002344 |
| PRINTS | PR00302 | Lupus La protein signature | 41 | 56 | 1.6E-10 | IPR002344 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 410 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79880.1 | RNA recognition motif (RRM)-containing protein. | 0 |
| RefSeq | XP_006389714.1 | la protein 2 isoform X1 [Eutrema salsugineum] | 0 |
| Q0V7U7 | La protein 2 OS=Arabidopsis thaliana OX=3702 GN=LA2 PE=1 SV=1 | 0 | |
| TrEMBL | V4JPE0 | HTH La-type RNA-binding domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018639mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23857 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034908 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20994, Sbi_jg22787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16662 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018229 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62463, Sgl67008 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019585, gene:ENSEOMG00000022090 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016300, CQ.Regalona.r1.2BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253450 |
| Apiaceae | Apium graveolens | 2 | Ag6G01310, Ag7G01960 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G003630 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698659, gene-LOC103707839 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.425.V1.1, AsparagusV1_04.1498.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G31063 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G79880.1, AT4G32720.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018639m.g.v1.0, Thhalv10025209m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g35890.v2.2, Sp7g30490.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g085960.2N, BniB03g009750.2N, BniB05g005320.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2112 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2308 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g11730, gene.Cymno09g00900 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0100s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-262 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.779 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013650 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08475 |
| Poaceae | Echinochloa crus-galli | 7 | AH07.2558, AH09.1443, BH07.2368, BH07.2369, BH09.1623 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0137070, gene-QOZ80_2BG0192680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178560.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G015010, Oco04G015500, Oco07G009730, Oco08G009490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g39700.1, LOC_Os04g42010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G192300, gene-BS78_06G148400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302240, Pt_Chr0302277 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G016530, Chr13G007860, Chr23G009650, Chr25G010050 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G617200, Tel2E01G617400, Tel6E01G111700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051030, gene_TRIDC2BG054450 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G352500.1, TraesCS2B02G371800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb246770_P001, Zm00001eb420980_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18573, nbis-gene-36988 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16643, Zma_g19986 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2347, evm.TU.LG07.1111 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g25090, gene.Posoc04g13800, gene.Posoc08g05040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.781 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14292, nbisL1-mrna-14293, nbisL1-mrna-28581 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1595 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.506 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000114 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14398 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19272 |
| Salicaceae | Populus euphratica | 2 | populus_peu04874, populus_peu12777 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635655, gene-LOC132635656 |
| Solanaceae | Solanum chilense | 1 | SOLCI000456600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028966 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32833_chr09_-, STRG.4132_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1713, TC02G0338 |
| Zosteraceae | Zostera marina | 3 | Zosma01g10510.v3.1, Zosma03g31040.v3.1, Zosma06g13720.v3.1 |