Basic Information
Locus ID:
Thhalv10018597m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 8065992 | 8067325 | + | Thhalv10018597m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 47,337.86 Da | 43.53 | 100.84 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 77 | 2.53418E-23 | - |
| Pfam | PF04564 | U-box domain | 32 | 99 | 1.4E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 120 | 388 | 6.58E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 101 | 2.21E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 421 | 1.2E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 102 | 3.4E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 3.2E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 40.444305 | IPR003613 |
| Coils | Coil | Coil | 145 | 165 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_006391350.1 | U-box domain-containing protein 20 [Eutrema salsugineum] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | V4MBR6 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018597mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology