Basic Information
Locus ID:
Thhalv10018594m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
DNA repair protein recA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 741753 | 746088 | + | Thhalv10018594m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 46,824.91 Da | 46.59 | 86.66 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 78 | 398 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 81 | 343 | 7.7E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 79 | 342 | 6.17E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 343 | 398 | 1.7E-17 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 108 | 400 | 7.5E-105 | IPR027417 |
| SMART | SM00382 | AAA_5 | 130 | 301 | 1.3E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 78 | 398 | 1.9E-144 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 109 | 267 | 28.993246 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 272 | 347 | 28.719727 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 286 | 294 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 372 | 389 | 2.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 200 | 229 | 2.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 166 | 195 | 2.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 283 | 311 | 2.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 318 | 347 | 2.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 238 | 267 | 2.6E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 79 | 404 | 45.101669 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 431 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_024008051.1 | DNA repair protein recA homolog 1, chloroplastic [Eutrema salsugineum] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | V4KIY1 | DNA repair protein recA homolog 1, chloroplastic OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018594mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology