Basic Information
Locus ID:
Thhalv10018579m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3623386 | 3624924 | + | Thhalv10018579m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 47,898.07 Da | 58.83 | 66.53 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 174 | 217 | 9.60781E-19 | - |
| Pfam | PF13639 | Ring finger domain | 174 | 217 | 5.3E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 223 | 6.56E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 224 | 1.2E-20 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 171 | 225 | 0.0049 | - |
| SMART | SM00184 | ring_2 | 175 | 216 | 3.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 217 | 13.123657 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 435 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006390685.1 | RING-H2 finger protein ATL54 [Eutrema salsugineum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | V4M9X2 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018579mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology