Basic Information
Locus ID:
Thhalv10018545m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3784990 | 3787351 | - | Thhalv10018545m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 48,776.10 Da | 71.63 | 77.76 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 12 | 162 | 4.23269E-57 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 232 | 275 | 3.29771E-25 | - |
| Pfam | PF02225 | PA domain | 53 | 141 | 5.7E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 232 | 275 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 75 | 162 | 1.96E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 283 | 7.07E-20 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 155 | 7.6E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 280 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 233 | 274 | 2.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 275 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 381 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006390720.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Eutrema salsugineum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | V4MA39 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018545mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology