Basic Information
Locus ID:
Thhalv10018463m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 12077800 | 12079265 | - | Thhalv10018463m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 56,260.89 Da | 42.39 | 79.22 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 255 | 304 | 5.1E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 56 | 100 | 5.0E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 197 | 245 | 6.7E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 227 | 317 | 2.51E-15 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 351 | 438 | 8.06E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 34 | 113 | 5.35E-14 | - |
| SMART | SM00249 | PHD_3 | 398 | 464 | 15.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 71 | 132 | 8.8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 217 | 280 | 1.3 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 6 | 56 | 8.2136 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13590.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_006391567.1 | uncharacterized protein LOC18009056 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KNG1 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018463mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10018463m.g.v1.0, Thhalv10019835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g017620.2N, BniB07g025220.2N |