Basic Information
Locus ID:
Thhalv10018366m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
CPK30
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 2585413 | 2588670 | + | Thhalv10018366m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 61,998.54 Da | 35.57 | 85.50 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 441 | 503 | 5.785E-19 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 63 | 321 | 2.70522E-139 | - |
| Pfam | PF13499 | EF-hand domain pair | 440 | 503 | 1.0E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 66 | 322 | 1.3E-75 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 368 | 429 | 4.7E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 350 | 529 | 1.37E-44 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 61 | 330 | 4.86E-86 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 150 | 330 | 2.2E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 65 | 149 | 7.7E-28 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 331 | 506 | 2.3E-51 | - |
| SMART | SM00054 | efh_1 | 441 | 469 | 6.6E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 64 | 322 | 2.2E-97 | IPR000719 |
| SMART | SM00054 | efh_1 | 369 | 397 | 3.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 405 | 433 | 0.013 | IPR002048 |
| SMART | SM00054 | efh_1 | 477 | 505 | 9.6E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 473 | 508 | 13.286007 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 64 | 322 | 48.625919 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 365 | 400 | 14.094975 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 437 | 472 | 15.015522 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 401 | 436 | 9.241175 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 378 | 390 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 450 | 462 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 184 | 196 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 70 | 93 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 486 | 498 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 42 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74740.1 | calcium-dependent protein kinase 30. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_006390395.1 | calcium-dependent protein kinase 30 [Eutrema salsugineum] | 0 |
| Q9SSF8 | Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana OX=3702 GN=CPK30 PE=1 SV=1 | 0 | |
| TrEMBL | E4MVH4 | mRNA, clone: RTFL01-02-L12 OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology