Basic Information
Locus ID:
Thhalv10018351m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 11750004 | 11755093 | + | Thhalv10018351m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 64,401.27 Da | 50.82 | 61.48 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 127 | 177 | 1.14679E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 258 | 1.8E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 275 | 323 | 5.4E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 265 | 7.65E-11 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 535 | 562 | 3.22E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 325 | 6.48E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 205 | 4.24E-18 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 532 | 562 | 6.6E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 254 | 509 | 1.7E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 208 | 3.7E-17 | IPR013083 |
| SMART | SM00547 | zf_4 | 537 | 561 | 1.5E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 262 | 332 | 0.054 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 196 | 258 | 5.5E-23 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 534 | 562 | 8.625751 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 171 | 9.568184 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 123 | 336 | 49.990623 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 539 | 558 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006391559.1 | probable E3 ubiquitin-protein ligase ARI8 [Eutrema salsugineum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | V4JU15 | RBR-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018351mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology