Basic Information
Locus ID:
Thhalv10018168m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains UspA (InterPro IPR006016), Serine threonine-protein kinase domain (InterPro IPR002290), Serine-threonine tyrosine-protein kinase (InterPro IPR001245), Serine threonine-protein kinase, active site (InterPro IPR008271), Protein kinase-like domain (InterPro IPR011009), Rossmann-like alpha beta alpha sandwich fold (InterPro IPR014729), Protein kinase, catalytic domain (InterPro IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro IPR020635)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 794651 | 797875 | + | Thhalv10018168m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 84,624.61 Da | 49.52 | 76.64 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 158 | 1.329E-58 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 457 | 708 | 6.8E-39 | IPR001245 |
| Pfam | PF00582 | Universal stress protein family | 18 | 147 | 1.3E-11 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 155 | 6.61E-12 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 431 | 708 | 4.65E-65 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 420 | 526 | 1.0E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 527 | 731 | 4.3E-47 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 16 | 155 | 3.8E-13 | IPR014729 |
| SMART | SM00220 | serkin_6 | 454 | 713 | 2.5E-18 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 454 | 716 | 34.534321 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 572 | 584 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 294 | - | - |
| Coils | Coil | Coil | 355 | 382 | - | - |
| Coils | Coil | Coil | 387 | 416 | - | - |
| Coils | Coil | Coil | 327 | 347 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_006389938.1 | U-box domain-containing protein 35 [Eutrema salsugineum] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | V4K886 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018168mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology