Basic Information
Locus ID:
Thhalv10018162m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 392784 | 396641 | + | Thhalv10018162m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 86,422.71 Da | 60.05 | 71.21 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 16 | 181 | 3.23E-9 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 506 | 547 | 2.26E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 497 | 555 | 1.8E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 430 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.2 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_024007674.1 | LOW QUALITY PROTEIN: glutamic acid-rich protein [Eutrema salsugineum] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | V4M7M5 | Tudor domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018162mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology