Basic Information
Locus ID:
Thhalv10018159m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 3583717 | 3589388 | - | Thhalv10018159m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 87,571.42 Da | 43.00 | 79.48 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 71 | 179 | 3.7E-15 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 388 | 715 | 1.1E-26 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 220 | 716 | 2.44E-63 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 322 | 381 | 4.81E-9 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 10 | 174 | 4.7E-48 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 220 | 735 | 5.5E-199 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 511 | 684 | 5.5E-199 | - |
| SMART | SM00298 | chromo_7 | 333 | 396 | 6.2E-9 | IPR000953 |
| SMART | SM00439 | BAH_4 | 69 | 189 | 6.2E-22 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 334 | 385 | 10.132101 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 69 | 189 | 19.706553 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 218 | 725 | 37.145653 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 405 | 419 | 2.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 451 | 464 | 2.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 219 | 235 | 2.9E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 774 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_024008467.1 | putative DNA (cytosine-5)-methyltransferase CMT1 [Eutrema salsugineum] | 0 |
| O49139 | Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana OX=3702 GN=CMT1 PE=5 SV=2 | 0 | |
| TrEMBL | V4KA46 | Chromo domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018159mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology