Basic Information
Locus ID:
Thhalv10018085m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 8037882 | 8041185 | + | Thhalv10018085m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 102,162.92 Da | 40.52 | 95.16 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 590 | 864 | 1.00056E-93 | - |
| Pfam | PF13855 | Leucine rich repeat | 107 | 146 | 1.5E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 326 | 360 | 5.0E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 60 | 2.2E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 585 | 859 | 1.2E-45 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 562 | 869 | 5.06E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 300 | 4.08E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 328 | 431 | 1.02E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 548 | 661 | 4.1E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 323 | 447 | 3.3E-36 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 662 | 879 | 5.9E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 321 | 1.2E-88 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 185 | 209 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 4.2E-6 | IPR003591 |
| SMART | SM00220 | serkin_6 | 584 | 865 | 1.1E-45 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 254 | 278 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 231 | 253 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 409 | 431 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 87 | 109 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 158 | 230.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 112 | 133 | 7.742758 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 584 | 865 | 39.650829 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 709 | 721 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 590 | 622 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 463 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_006391349.1 | receptor protein kinase TMK1 [Eutrema salsugineum] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | V4JTJ2 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018085mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology