Basic Information
Locus ID:
Thhalv10018069m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 2094792 | 2098057 | + | Thhalv10018069m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 108,798.12 Da | 31.25 | 104.48 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 707 | 979 | 1.93768E-161 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 702 | 976 | 2.4E-43 | IPR001245 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 562 | 599 | 3.4E-7 | IPR025875 |
| Pfam | PF13855 | Leucine rich repeat | 489 | 549 | 9.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 76 | 1.8E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 371 | 390 | 0.54 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 428 | 1.65E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 692 | 976 | 1.48E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 396 | 626 | 2.27E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 152 | 232 | 1.9E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 234 | 357 | 1.7E-28 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 664 | 777 | 2.8E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 151 | 1.2E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 778 | 985 | 2.1E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 358 | 632 | 4.7E-81 | IPR032675 |
| SMART | SM00220 | serkin_6 | 701 | 976 | 3.0E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 273 | 296 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 345 | 369 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 584 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 488 | 512 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 152 | 176 | 200.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 701 | 977 | 37.050175 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 371 | 392 | 7.026593 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 822 | 834 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_006390268.1 | receptor protein kinase CLAVATA1 [Eutrema salsugineum] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | V4K961 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018069mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology