Basic Information
Locus ID:
Thhalv10018037m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
primary shoot apical meristem specification
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 289375 | 295668 | - | Thhalv10018037m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 123,568.02 Da | 43.43 | 79.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 903 | 936 | 0.0089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 500 | 1030 | 6.67E-43 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 345 | 570 | 1.01E-27 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 964 | 1101 | 7.85E-9 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 962 | 1116 | 2.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 719 | 956 | 1.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 513 | 1.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 515 | 709 | 2.5E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 988 | 1029 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 897 | 936 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1042 | 1082 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 445 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 669 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 814 | 851 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.038 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.5E-16 | IPR006595 |
| SMART | SM00320 | WD40_4 | 854 | 894 | 1.3 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.255796 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 904 | 936 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 634 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 904 | 945 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1116 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_024009748.1 | topless-related protein 1 isoform X1 [Eutrema salsugineum] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | V4KIM1 | TOPLESS OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018037mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology