Basic Information
Locus ID:
Thhalv10018022m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_9 | 2570450 | 2577221 | + | Thhalv10018022m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 145,340.44 Da | 49.34 | 82.54 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1157 | 1200 | 5.71903E-22 | - |
| CDD | cd12108 | Hr-like | 607 | 752 | 5.05316E-22 | - |
| CDD | cd12108 | Hr-like | 34 | 165 | 4.56231E-23 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 37 | 167 | 1.8E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1205 | 1261 | 2.8E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1156 | 1199 | 1.9E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 1030 | 1104 | 2.4E-18 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1095 | 1150 | 1.31E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1023 | 1087 | 3.53E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1151 | 1204 | 7.07E-9 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 29 | 185 | 3.2E-21 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 287 | 432 | 3.1E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1151 | 1202 | 2.6E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1228 | 1264 | 7.7E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 604 | 772 | 7.9E-12 | - |
| SMART | SM00184 | ring_2 | 1072 | 1102 | 17.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 1158 | 1199 | 9.7E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1023 | 1092 | 22.99049 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1158 | 1200 | 11.825393 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1094 | 1157 | 28.838581 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_006390392.1 | zinc finger protein BRUTUS-like At1g74770 [Eutrema salsugineum] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | V4KK93 | Zinc finger protein BRUTUS-like At1g18910 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018022mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology