halophFGD

Basic Information

Locus ID: Thhalv10017976m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: phosphopantothenoylcysteine decarboxylase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_10	11629692	11630833	-	Thhalv10017976m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.61	42,775.64 Da	47.65	87.30	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	183	350	1.7E-36	IPR006527
Pfam	PF00646	F-box domain	3	44	4.1E-10	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	53	3.14E-14	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	5	43	1.8E-7	-
SMART	SM00256	fbox_2	7	47	4.2E-11	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	97	321	4.4E-41	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	1	47	9.338503	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K01598 (phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36])

Pathway:

ko00770 (Pantothenate and CoA biosynthesis) map00770 (Pantothenate and CoA biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00120 (Coenzyme A biosynthesis, pantothenate => CoA)

Reaction:

R03269 ((R)-4'-Phosphopantothenoyl-L-cysteine <=> Pantetheine 4'-phosphate + CO2)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G16590.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_006294410.1	putative F-box protein At3g16590 [Capsella rubella]
Swiss-Prot	Q9LUS5	Putative F-box protein At3g16590 OS=Arabidopsis thaliana OX=3702 GN=At3g16590 PE=4 SV=1
TrEMBL	V4P108	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017976mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	22	AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... AT1G51290.1, AT1G51320.1, AT1G53325.1, AT1G58090.1, AT1G59630.1, AT2G07120.1, AT2G14710.1, AT2G17310.1, AT3G16555.1, AT3G16580.1, AT3G16590.1, AT3G17710.1, AT3G18340.1, AT3G44130.1, AT3G51171.1, AT3G59590.1, AT3G59610.1, AT5G37040.1
Brassicaceae	Eutrema salsugineum	17	Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... Thhalv10009548m.g.v1.0, Thhalv10009774m.g.v1.0, Thhalv10015389m.g.v1.0, Thhalv10017596m.g.v1.0, Thhalv10017976m.g.v1.0, Thhalv10019557m.g.v1.0, Thhalv10019738m.g.v1.0, Thhalv10019791m.g.v1.0, Thhalv10021923m.g.v1.0, Thhalv10022086m.g.v1.0, Thhalv10022098m.g.v1.0, Thhalv10022412m.g.v1.0, Thhalv10023851m.g.v1.0, Thhalv10024017m.g.v1.0, Thhalv10024060m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g27690.v2.2, Sp5g16370.v2.2
Brassicaceae	Brassica nigra	23	BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... BniB01g047200.2N, BniB01g048040.2N, BniB01g048050.2N, BniB01g048060.2N, BniB01g054460.2N, BniB02g084110.2N, BniB04g047920.2N, BniB04g047930.2N, BniB04g048010.2N, BniB05g005280.2N, BniB07g029660.2N, BniB07g029670.2N, BniB07g048410.2N, BniB07g052250.2N, BniB07g052480.2N, BniB07g052490.2N, BniB07g052500.2N, BniB08g022560.2N, BniB08g022580.2N, BniB08g022590.2N