Basic Information
Locus ID:
Thhalv10017960m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 7717413 | 7718843 | + | Thhalv10017960m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 54,043.40 Da | 41.67 | 84.01 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 347 | 465 | 5.0E-19 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 147 | 173 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 179 | 207 | 1.3E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 84 | 241 | 6.7E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 147 | 173 | 7.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 179 | 211 | 6.3E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 144 | 174 | 9.141782 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 176 | 210 | 10.972319 | IPR002885 |
| Coils | Coil | Coil | 324 | 344 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34370.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_006410582.1 | pentatricopeptide repeat-containing protein At2g34370, mitochondrial [Eutrema salsugineum] | 0 |
| Q8S8Q7 | Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H25 PE=2 SV=1 | 0 | |
| TrEMBL | V4LNC8 | DYW_deaminase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017960mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology