Basic Information
Locus ID:
Thhalv10017955m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 5264864 | 5265561 | + | Thhalv10017955m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 25,149.02 Da | 61.20 | 91.19 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF117281 | Kelch motif | 53 | 217 | 7.72E-19 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 24 | 217 | 1.6E-13 | IPR015915 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19470.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006410076.1 | F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum] | 0 |
| P0C2F7 | Kelch repeat-containing protein At1g19470 OS=Arabidopsis thaliana OX=3702 GN=At1g19470 PE=2 SV=1 | 0 | |
| TrEMBL | V4NXB3 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017955mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 31 | Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g12680.v2.2, Sp5g22490.v2.2 |
| Brassicaceae | Brassica nigra | 12 | BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... |