Basic Information
Locus ID:
Thhalv10017860m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 6977721 | 6978902 | - | Thhalv10017860m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 30,574.99 Da | 52.91 | 68.28 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 22 | 108 | 1.5E-16 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 11 | 119 | 1.19E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 2 | 118 | 9.7E-23 | IPR036431 |
| SMART | SM00501 | bright_3 | 20 | 113 | 2.5E-18 | IPR001606 |
| SMART | SM01014 | ARID_2 | 16 | 108 | 1.6E-20 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 19 | 112 | 22.080517 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 261 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006410411.2 | high mobility group B protein 15 [Eutrema salsugineum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | V4M6E8 | ARID domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017860mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology