Basic Information
Locus ID:
Thhalv10017807m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
receptor-like protein kinase At2g42960
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 11831526 | 11833615 | - | Thhalv10017807m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 55,831.27 Da | 40.96 | 88.08 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 194 | 460 | 7.84315E-102 | - |
| Pfam | PF00069 | Protein kinase domain | 190 | 455 | 1.3E-47 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 172 | 464 | 1.46E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 264 | 478 | 2.5E-65 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 170 | 263 | 1.9E-34 | - |
| SMART | SM00220 | serkin_6 | 188 | 467 | 1.1E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 188 | 467 | 39.69323 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 310 | 322 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 194 | 217 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 483 | - | - |
| Coils | Coil | Coil | 208 | 228 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42960.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006411569.2 | probable receptor-like protein kinase At2g42960 [Eutrema salsugineum] | 0 |
| Q9SJG2 | Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana OX=3702 GN=At2g42960 PE=3 SV=1 | 0 | |
| TrEMBL | V4MCZ0 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017807mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology